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SYLVIA
Estimation of the synthetic accessibility of organic compounds.
Features
Features Description
input file format MDL SDFile (incl. Molfile), SMILES, CTX file
output file format MDL SDFile (incl. Molfile), CTX file
property

synthetic accessibility of organic compounds on a scale from 1 (straightforward synthesis) to 10 (complex and challenging synthesis) using:

  • structure-based components: molecular graph, ring and stereochemical complexity

  • starting material-based component: similarity to available chemicals

  • reaction-based component: frequency analysis on the presence of strategic bonds that are extracted from reaction databases

applicability broad range of organic chemistry
extensibility loading of in-house starting material databases (extension or replacement of built-in starting material database)
speed 0.25 s/cpd on a 2.0 GHz workstation (batch version)
User Interface
  • Command line interface supporting batch mode
  • Component for SciTegic Pipeline Pilot
  • Wizard-driven graphical user interface including
    • visualization of chemical structures, synthetic accessibility scores and read-in information
    • adjustable color-coding for low, medium and high synthetic accessibility scores
    • options for sorting and filtering of compounds
    • structure input via file or by a molecule editor



    SYLVIA (??K)
System Requirements
  • Microsoft Windows 2000/XP (win32)
  • SUSE x86 Linux (release 8/9, kernel 2.4/2.6, AMD64 on request)
  • RedHat x86 Linux 8, 9, Enterprise (kernel 2.4/2.6)
Additional Info
Reference
  • Boda, K.; Seidel, T.; Gasteiger, J. Structure and reaction based evaluation of synthetic accessibility. J. Comp.-Aided. Mol. Des. 2007, 21, 311-325.
    DOI 10.1007/s10822-006-9099-2
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SYLVIA
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